PeakAnnotator

  • Rating:
  • Version: 1.3
  • Publisher:
    www.ebi.ac.uk
  • File Size: 319.7 KB
  • Date: Jan 18, 2011
  • License: Freeware
  • Category:
    Calculator
    Office
PeakAnnotator Download
Free Download PeakAnnotator 1.3

PeakAnnotator is a Java GUI application for annotating genomic loci.

Usage: java -jar peakAnnotator.jar -u utility <Options>
press -u <utility name> in order to get help about the options that are specific for each utility

Options include:
-help,-? displays help information
-u,--utility <string> utility: NDG, TSS, ODS
-p,--peakFile <string> input peak file
-a,--annotationFile <string> input annotation GTF or BED file
-p2,--peakFile2 <string> input second peak file
-o,--outDir <string> output folder
-x,--prefix <string> string to add to output file names
-s,--symbolFile <string> optional input symbol file
-g,--geneType <string> gene type for annotation: protein_coding or all
-cs,--chrSizeFile <string> file indicating chromosome sizes
-r,--numRandomDatasets <decimal integer> number of random datasets to generate when calculating overlap p value (default 1000)

Requirements:
* Java

The license of this software is Freeware, you can free download and free use this calculator software.

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