Analyze nucleotide substitution model fast and easy.ModelGenerator is a model selection program that selects optimal amino acid and nucleotide substitution models from Fasta or Phylip alignments. ModelGenerator supports 56 nucleotide and 96 amino acid substitution models.

Startup command
java -jar modelgenerator.jar alignment_file num_gamma_categories

If you get a java.lang.OutOfMemory error then increase the amount of memory available to java using the -Xmx option (e.g. java -Xmx200m ....)

Requirements:
* Java

The license of this software is Freeware, you can free download and free use this cad software.