Spliced alignment made easy. ABMapper is a portable, easy-to-use package for spliced alignment, junction site detection, and reads mapping. The core module was written in C++ and wrapped in PERL scripts.

Download ABMapper Binary and put "ABMapper","runABMapper.pl","libabmapper.PL" under the same directory and run "perl runABMapper.pl", then you will get the usage information.

Please make sure to keep the working directory under where ABMapper located, otherwise, you should change some path manually.

1. change the require sentence in "runABMapper.pl", to a absoluted path of libabmapper.PL
2.change the "$path" variable in "libabmapper.PL" to the absolute path of ABMapper without the last "/".
3. Please change "ABMapper_win32.exe" or "ABMapper_win64.exe" to "ABMapper.exe" and put together with "runABMapper.pl" and "libabmapper.PL"

The license of this software is Free, you can free download and free use this graphing software.